The pairwise homoplasy index
WebbThe offspring displayed clear evidence of recombination on a genetic level as shown in the variations observed between banding patterns in the amplified fragment length polymorphism. Also a net-like and reticulated NeighborNet was observed and the pairwise homoplasy index test for recombination supported the presence of recombination (P = 0 Webb1 jan. 2005 · Recombination tests based on the pairwise homoplasy index (PHI, Bruen, et al. 2006), Max χ 2 (Maynard Smith and Smith 1992), and …
The pairwise homoplasy index
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Webbpairwise homoplasy index; PDA potato dextrose agar; SSU small subunit ribosomal RNA gene; YMA yeast malt agar. Table 3. Data used for phylogenetic analysis in this study and their corresponding GenBank accession numbers. Type species are denoted by T. Sequences derived in this study are shown in bold. Webb30 juli 2024 · SUPPLEMENTARY INFORMATION Natural selection in the evolution of SARS-CoV-2 in bats, not humans, created a highly capable human pathogen Oscar A. MacLean 1,#, Spyros Lytras, Steven Weaver2, Joshua B. Singer1, Maciej F. Boni3, Philippe Lemey4, Sergei L. Kosakovsky Pond2,*, David L. Robertson1,* 1MRC-University of Glasgow Centre …
Webb7 juli 2024 · A pairwise homoplasy index (PHI) test was performed in SplitsTree (version 4.1.4.4) using the Kimura’s two parameter (K2P) models for low genetic distance … Webb1 juli 2024 · Moreover, the pairwise homoplasy index test and the comparison of morphological and ecological characters, have strengthened the fact that reproductive isolation and geographical or host plant barriers to gene flow are absent. This study has also demonstrated that the identification of species in Diaporthe might . Declaration of …
Webb9 dec. 2024 · Consistency index (ci), retention index (ri), rescaled consistency index (rc) and homoplasy index (hi) are presented for each “character” (taxon); Table S4: Apomorphy list for Figure 2. A double-lined arrow means that the change occurs in all possible reconstructions (i.e., is unambiguous); characters with such changes are uniquely … Webb2013; Chan et al. 2013). Index Fungorum (www.indexfungorum.org) has listed 126 names under this genus. In China, taxonomic research on Amauroderma began with Teng, who recorded 10 species (Teng 1936, 1939, 1963). Later Zhao et al. (1979, 1983, 1984) and Zhao & Zhang (1986, 1987a,b, 2000) reported 20 species, nine of which were new.
Webb9 okt. 2024 · A pairwise homoplasy index (PHI or Φw) below 0.05 provide evidence for the presence of significant recombination within a dataset. According to the GCPSR analysis, our dataset showed PHI of 1.0, indicating no significant genetic recombination between C. vitis and its sister taxa, C. diplodiella and C. diplodiopsis ( Fig. 3 ).
WebbConsistency Index (CI) minimum number of changes divided by the number required on the tree. CI=1 if there is no homoplasy negatively correlated with the number of species sampled. Retention Index (RI) RI = MaxSteps ObsSteps ... Convert the raw data (sequences) to a pairwise distances Try to nd a tree that explains these distances. chrome vs silver wheelsWebb9 maj 2024 · pairwise homoplasy index RAD-Seq restriction site-associated DNA sequencing pairwise homoplasy index SNPs single-nucleotide polymorphisms WGS whole-genome sequencing. Copyright The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. chrome vs stainless steel barrelWebbIn this tale as old as time, learn how the unbreakable bond of INDEX and MATCH can overcome such VLOOKUP problems . . . even when looking up to the left of a lookup value column! chrome v stainless steel brushedWebbPathogenicity tests and the pairwise homoplasy index test suggest that C. jiangxiense and C. kahawae subsp. kahawae are two independent species. This study represents the first report of C. alienum and C. cliviae occurring on Camellia sinensis. In addition, our study demonstrated that the combined chrome vulnerability 2022Webb1 apr. 2006 · The term “pairwise homoplasy index” refers to the fact that the refined incompatibility score can be interpreted as the minimum number of convergent or recurrent mutations (homoplasies) necessarily present on any tree describing the … chrome w11WebbPHI test and other tests of recombination The PhiPack software package implements a few tests for recombination and can produce refined incompatibility matrices as well. … chrome w7 32Webb5 dec. 2024 · Pairwise homoplasy index test. Application of the PHI test of the concatenated six-locus sequences revealed that no significant recombination event was observed between M. xinjiangensis and M. perniciosa (Фw = 0.99). Taxonomy. The isolates were assigned to three species depending on morphology and multilocus phylogeny. chrome v star 650 cruiser